yabE [2019-08-15 12:55:43]

similar to cell wall binding protein

locus: BSU_00400

pI: 9.28

mw: 47.55 kDa

protein length: 437 aa

gene length: 1314 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 1|Cellular processes] → [category|SW 1.1|Cell envelope and cell division] → [category|SW 1.1.6|Cell wall/ other/ based on similarity]

Gene

Coordinates: 48,629 → 49,942

The protein

[SW|Domains]

• contains a SPS domain

Expression and Regulation

Operons

• genes: [gene|FEC200568646319DBFAD3A7E20AFA1CF5185EFB2|yabE]
  description: [Pubmed|19047346]

  sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|19047346], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]

  additional information

  • expression is negatively controlled by a cis-acting antisense RNA that is dependent on [protein|search|SigX] and [protein|search|SigM] [http://www.ncbi.nlm.nih.gov/sites/entrez/19047346 PubMed]

additional information

• the mRNA is cleaved by [protein|BAB297D18F94FFA67B8D12A684AB4D1BCDFB4981|RNase III] [PubMed|26883633]

Biological materials

Mutant

• MGNA-B905 (yabE::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1904 NBRP B. subtilis, Japan]
• BKE00400 (Δ[gene|FEC200568646319DBFAD3A7E20AFA1CF5185EFB2|yabE]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE00400 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAAAGCTCAGTGTCCTCTT, downstream forward: _UP4_TAGTATATACTTATGTATTC
• BKK00400 (Δ[gene|FEC200568646319DBFAD3A7E20AFA1CF5185EFB2|yabE]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK00400 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAAAGCTCAGTGTCCTCTT, downstream forward: _UP4_TAGTATATACTTATGTATTC

labs

• [SW|John Helmann], Cornell University, USA [http://www.micro.cornell.edu/research/labs/helmann-lab/index.cfm Homepage]

References

• 19047346,26883633